Extra Resources
Last updated: 2025-10-14
Checks: 2 0
Knit directory:
DigitalResearchSkillsNetwork/
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Untracked: analysis/x202504.Rmd
Untracked: analysis/x202505.Rmd
Untracked: analysis/x202505_Workshop (2).Rmd
Untracked: analysis/x202506.Rmd
Untracked: analysis/x202506_stats.Rmd
Untracked: analysis/x202506_tidyverse.Rmd
Untracked: analysis/x202507.Rmd
Untracked: analysis/x202508.Rmd
Unstaged changes:
Deleted: analysis/202504.Rmd
Deleted: analysis/202505.Rmd
Deleted: analysis/202505_Workshop.Rmd
Deleted: analysis/202506.Rmd
Deleted: analysis/202506_stats.Rmd
Deleted: analysis/202506_tidyverse.Rmd
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 2d56bb9 | DrThomasOneil | 2025-10-14 | wflow_publish(c("analysis/0_resources.Rmd", "analysis/index.Rmd", |
| html | 377b249 | DrThomasOneil | 2025-09-05 | Build site. |
| html | 6f8a683 | DrThomasOneil | 2025-09-04 | Build site. |
| html | 19f6841 | DrThomasOneil | 2025-08-28 | Build site. |
| Rmd | 26c0703 | DrThomasOneil | 2025-08-28 | wflow_publish(c("analysis/0_resources.Rmd")) |
| html | 0dd27e2 | DrThomasOneil | 2025-08-13 | Build site. |
| html | 05dd2b2 | DrThomasOneil | 2025-08-12 | Build site. |
| html | 5336148 | DrThomasOneil | 2025-06-30 | Build site. |
| html | 80762c1 | DrThomasOneil | 2025-05-23 | Build site. |
| html | e794405 | DrThomasOneil | 2025-05-15 | Build site. |
| Rmd | b102ce1 | DrThomasOneil | 2025-05-15 | wflow_publish(files) |
| html | fb553e5 | DrThomasOneil | 2025-05-14 | Build site. |
| html | cff7923 | DrThomasOneil | 2025-05-07 | Build site. |
| Rmd | ff95f8f | DrThomasOneil | 2025-05-07 | wflow_publish(files) |
| html | 16a9613 | DrThomasOneil | 2025-04-30 | Build site. |
| html | 862d6b6 | DrThomasOneil | 2025-04-29 | Build site. |
| html | 938818e | DrThomasOneil | 2025-04-14 | Build site. |
| html | ed690e6 | DrThomasOneil | 2025-04-14 | Build site. |
| html | cb886ef | DrThomasOneil | 2025-04-10 | Build site. |
| html | f6c0433 | YuchenLi | 2025-04-09 | Build site. |
| html | 8d78b0f | YuchenLi | 2025-04-09 | Build site. |
| html | 7421f69 | DrThomasOneil | 2025-04-08 | Build site. |
| html | f2d3385 | DrThomasOneil | 2025-03-24 | update |
| html | 517dcf9 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 6a4432b | DrThomasOneil | 2025-03-24 | Build site. |
| html | 1f218f3 | DrThomasOneil | 2025-03-24 | Build site. |
| html | dca90e9 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 1d1c076 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 956ba9b | DrThomasOneil | 2025-03-24 | Build site. |
| Rmd | 6b72e34 | DrThomasOneil | 2025-03-24 | wflow_publish(c("analysis/*.Rmd")) |
| html | d600337 | DrThomasOneil | 2025-03-18 | Build site. |
| html | b537f69 | DrThomasOneil | 2025-03-18 | Build site. |
| html | b7982e9 | DrThomasOneil | 2025-03-16 | Build site. |
| html | fc5dd81 | DrThomasOneil | 2025-03-16 | Build site. |
| html | 8e1c1a3 | DrThomasOneil | 2025-03-16 | Build site. |
| html | 36dc5fc | DrThomasOneil | 2025-03-03 | Build site. |
| html | 49bb28c | DrThomasOneil | 2025-03-03 | Build site. |
| html | 8258922 | DrThomasOneil | 2025-03-03 | Build site. |
| html | 71646a5 | DrThomasOneil | 2025-02-27 | Build site. |
| Rmd | c05aafe | DrThomasOneil | 2025-02-27 | wflow_publish(c("analysis/*.Rmd")) |
| html | c7f5738 | DrThomasOneil | 2025-02-24 | Build site. |
| html | 79d09b1 | DrThomasOneil | 2025-02-24 | Build site. |
| html | a5c9f2c | DrThomasOneil | 2025-02-24 | Build site. |
| html | ca2c086 | DrThomasOneil | 2025-02-24 | Build site. |
| html | fca0503 | DrThomasOneil | 2025-02-24 | Build site. |
| html | af42fba | DrThomasOneil | 2025-02-24 | Build site. |
| html | 1aeefc7 | DrThomasOneil | 2025-02-20 | Build site. |
| html | 5fe30de | DrThomasOneil | 2025-02-20 | Build site. |
| html | 5ef4f12 | DrThomasOneil | 2025-02-11 | Build site. |
| Rmd | 4f9c6de | DrThomasOneil | 2025-02-11 | update book |
| html | f48f4f0 | DrThomasOneil | 2025-02-10 | Build site. |
| html | 3bfe847 | DrThomasOneil | 2025-02-10 | Build site. |
| html | b14f3b5 | DrThomasOneil | 2025-02-10 | Build site. |
| html | bfba3e0 | DrThomasOneil | 2025-02-07 | Build site. |
| Rmd | b7989a4 | DrThomasOneil | 2025-02-07 | wflow_publish(c("analysis/*.Rmd")) |
| html | f3d6f87 | DrThomasOneil | 2025-02-04 | Build site. |
| html | f654b8d | DrThomasOneil | 2025-02-04 | Build site. |
| Rmd | e6ea78d | DrThomasOneil | 2025-02-04 | wflow_publish(c("analysis/*.Rmd")) |
| html | 4968925 | DrThomasOneil | 2025-01-30 | Build site. |
| Rmd | afccf59 | DrThomasOneil | 2025-01-30 | wflow_publish(c("analysis/*.Rmd")) |
| html | 299ff3d | DrThomasOneil | 2025-01-28 | Build site. |
| Rmd | 272b312 | DrThomasOneil | 2025-01-28 | wflow_publish(c("analysis/*")) |
| html | 023005d | DrThomasOneil | 2025-01-07 | Build site. |
| html | c893d70 | DrThomasOneil | 2025-01-06 | Build site. |
| Rmd | 8eec2ce | DrThomasOneil | 2025-01-06 | Initial Deployment |
| html | 660b0f8 | DrThomasOneil | 2025-01-06 | Build site. |
| html | 2e79a1d | DrThomasOneil | 2025-01-06 | Build site. |
| Rmd | 451a21f | DrThomasOneil | 2025-01-06 | Initial Deployment |
Coding and Single cell crash course
From a single cell and spatial analysis course by Cold Spring Harbour Laboratory, these resources are great for both total beginners to coding and analysis to those starting to analyse their own data.
This is the Basics of Linux/Shell and R where you how to navigate through your Terminal and the start of your R journey.
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Sydney Precision Data Science Centre
The purpose of the Sydney Precision Data Science Centre is to engage in high quality and transformational multidisciplinary research and to provide a research hub to all interdisciplinary researchers in data-intensive science.
We generate innovative, fit-for-purpose applied analytical methodologies that are critical to knowledge discovery through the deep integration of various quantitative disciplines and research paradigms.
Sign up to the network to receive emails on upcoming webinars and events.
Computational Genomics with R
Computational Genomics with R is an exceptionally comprehensive resource for biomedical bioinformatics. It covers a broad range of topics—statistics, machine learning, sequencing data processing, and more—while providing both code examples and clear explanations. Although it may not be the most accessible starting point for wet-lab researchers, it serves as an invaluable reference for deeper explorations of bioinformatic analyses.
10X Analysis Resources
10X Genomics are a unique company, in that they provide a lot of supporting materials. In the drop down below, we have listed a series of resources that 10X have provided, including how-to videos and tutorials.
Drop-down
Xenium In situ
Downloads and documentation
Webinars and workshops
Visium HD
Downloads and documentation
Cloud Analysis
Webinars and workshops
Stretchly
Stretchly is an open-source app designed to encourage healthy work habits by prompting regular short (30-second) and long (20-minute) breaks. I’ve found it invaluable for maintaining focus and preventing burnout. It’s highly customizable, allowing you to tailor prompts to your needs.
roadmap.sh
roadmap.sh provides structured learning pathways for various tech-related skills, from Data Science to DevOps. The Data Science and AI roadmap outlines essential topics such as mathematics, statistics, and coding, along with curated free and paid learning resources. These roadmaps are community-driven and frequently updated, making them a great guide for self-paced learning.
LinkedIn Learning
LinkedIn Learning offers a vast library of online courses covering data analysis, programming (including R and Python), statistics, research skills, and professional development. There is a short R for Data Science course that is quite nice.
You should have access to LinkedIn Learning through your University email. Otherwise, WIMR staff can apply for a license through WIMR.
Sydney Informatics Hub
Sydney Informatics Hub offers training workshops regularly on research data management, statistical methods, and high-performance computing. These are more general methods that not only apply to biomedical research, but may provide inspiration or good fundamental knowledge on the analytical methods we use.
Interactive R learning UI
learnr is a package that you can install which provides a nice little UI if you want to practice basicR skills and prefer some interactivity.
ggplot2 book
ggplot2:Elegant Graphics for Data Analysis is a nice, comprehensive handbook for graphing using ggplot2. It covers the basic layout, different graph types, customizing elements such as colours, group overlays, annotations, etc.
